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accession-icon GSE32355
E2f7/E2f8 and E2f1/E2f2/E2f3 null and wild type liver along with E2f7/E2f8 null and wild type trophoblast giant cells
  • organism-icon Mus musculus
  • sample-icon 101 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Canonical and atypical E2Fs regulate the mammalian endocycle.

Alternate Accession IDs

E-GEOD-32355

Sample Metadata Fields

Age, Specimen part

View Samples
accession-icon GSE32354
Expression data from E2f7/E2f8 and E2f1/E2f2/E2f3 null liver (Affymetrix)
  • organism-icon Mus musculus
  • sample-icon 35 Downloadable Samples
  • Technology Badge Icon

Description

To understand the underlying cause and mechanisms of changes in hepatocyte ploidy upon Albumin-Cre mediated deletion of E2f7&8 and Mx1-Cre mediated deletion of E2f1,2&3, we analysed global gene expression of 6 weeks and 2 months liver tissues.

Publication Title

Canonical and atypical E2Fs regulate the mammalian endocycle.

Alternate Accession IDs

E-GEOD-32354

Sample Metadata Fields

Age, Specimen part

View Samples
accession-icon GSE71383
Balanced E2F transcriptional output is essential for tumor suppression in the liver
  • organism-icon Mus musculus
  • sample-icon 59 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

E2f8 mediates tumor suppression in postnatal liver development.

Alternate Accession IDs

E-GEOD-71383

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE49237
Analysis of TBR1 downnstream target genes in embryonic forebrains
  • organism-icon Mus musculus
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

TBR1 is a forebrain specific T-box transcription factor. Tbr1-/- mice have been characterized by defective axonal projections from cerebral cortex and abnormal neuronal migration of cerebral cortex and amygdala.

Publication Title

Tbr1 haploinsufficiency impairs amygdalar axonal projections and results in cognitive abnormality.

Alternate Accession IDs

E-GEOD-49237

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE49129
Otitis Media Impact on Ear
  • organism-icon Mus musculus
  • sample-icon 30 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Otitis media impacts hundreds of mouse middle and inner ear genes.

Alternate Accession IDs

E-GEOD-49129

Sample Metadata Fields

Age, Specimen part, Treatment

View Samples
accession-icon GSE49128
Otitis Media Impact on Middle Ear
  • organism-icon Mus musculus
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon

Description

Objective: Otitis media is known to alter expression of cytokine and other genes in the mouse middle ear and inner ear. However, whole mouse genome studies of gene expression in otitis media have not previously been undertaken. Ninety-nine percent of mouse genes are shared in the human, so these studies are relevant to the human condition.

Publication Title

Otitis media impacts hundreds of mouse middle and inner ear genes.

Alternate Accession IDs

E-GEOD-49128

Sample Metadata Fields

Age, Specimen part, Treatment

View Samples
accession-icon GSE49122
Otitis Media Impact on Inner Ear
  • organism-icon Mus musculus
  • sample-icon 13 Downloadable Samples
  • Technology Badge Icon

Description

Objective: Otitis media is known to alter expression of cytokine and other genes in the mouse middle ear and inner ear. However, whole mouse genome studies of gene expression in otitis media have not previously been undertaken. Ninety-nine percent of mouse genes are shared in the human, so these studies are relevant to the human condition.

Publication Title

Otitis media impacts hundreds of mouse middle and inner ear genes.

Alternate Accession IDs

E-GEOD-49122

Sample Metadata Fields

Age, Specimen part, Treatment

View Samples
accession-icon GSE20500
T cell genes regulated by retinoic acid
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

This is to determine the T cell genes regulated by retinoic acid.

Publication Title

Complementary roles of retinoic acid and TGF-β1 in coordinated expression of mucosal integrins by T cells.

Alternate Accession IDs

E-GEOD-20500

Sample Metadata Fields

Specimen part

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accession-icon GSE52024
Genome wide analysis of transcriptome and microRNAs in early stage of Alzheimer's disease
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Prediction of miRNA-mRNA associations in Alzheimer's disease mice using network topology.

Alternate Accession IDs

E-GEOD-52024

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE12609
Transcription factor Arx null brains (fulp-affy-mouse-364520)
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

Arx is a paired-box homeodomain transcription factor and the vertebrate ortholog to the Drosophila aristaless (al) gene. Mutations in Arx are associated with a variety of human diseases, including X-linked infantile spasm syndrome (OMIM: 308350), X-linked myoclonic epilepsy with mental retardation and spasticity (OMIM: 300432), X-linked lissencephaly with ambiguous genitalia (OMIM: 300215), X-linked mental retardation 54 (OMIM: 300419), and agenesis of the corpus callosum with abnormal genitalia (OMIM: 300004). Arx-deficient mice exhibit a complex, pleiotrophic phenotype, including decreased proliferation of neuroepithelial cells of the cortex, dysgenesis of the thalamus and olfactory bulbs, and abnormal nonradial migration of GABAergic interneurons. It has been suggested that deficits in interneuron specification, migration, or function lead to loss of inhibitory neurotransmission, which then fails to control excitatory activity and leads to epilepsy or spasticities. Given that Arx mutations are associated with developmental disorders in which epilepsy and spasticity predominate and that Arx-deficient mice exhibit deficits in interneuron migration, understanding the function of Arx in interneuron migration will prove crucial to understanding the pathology underlying interneuronopathies. Yet, downstream transcriptional targets of Arx, to date, remain unidentified.

Publication Title

Identification of Arx transcriptional targets in the developing basal forebrain.

Alternate Accession IDs

E-GEOD-12609

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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