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accession-icon GSE6933
Unique Molecular Signature of Multipotent Adult Progenitor Cells (Affy)
  • organism-icon Mus musculus, Rattus norvegicus
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

We compare the transcriptome of embryonic stem cells (ESCs), adult stem cells with apparent greater differentiation potential such as multipotent adult progenitor cells (MAPCs), mesenchymal stem cells (MSCs) and neurospheres (NS). Mouse and rat MAPCs were used in this study and two different array platforms (Affymetrix and NIA) were used for mouse samples.

Publication Title

Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity.

Alternate Accession IDs

E-GEOD-6933

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE6291
Transcriptome Analysis Multipotent Adult Progenitor Cells (Affy)
  • organism-icon Mus musculus
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

We compare the transcriptome of two different clones of multipotent adult progenitor cells (MAPCs) using Affymetrix arrays.

Publication Title

Hematopoietic reconstitution by multipotent adult progenitor cells: precursors to long-term hematopoietic stem cells.

Alternate Accession IDs

E-GEOD-6291

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE108036
Comparative analysis of cartilage tissue from ANP32A knockout mice and wildtype C57/Bl6 mice
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

A genetic association between the ANP32A gene and osteoarthritis has been suggested. We compared transcriptome profiles of the articular cartilage and subchondral bone from mice deficient in ANP32A with wild-type mice to get insights into the role of ANP32A in the pathogenesis of ostearthritis.

Publication Title

ANP32A regulates ATM expression and prevents oxidative stress in cartilage, brain, and bone.

Alternate Accession IDs

E-GEOD-108036

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE12337
Transcriptomic analysis of PPARalpha-dependent alterations during cardiac hypertrophy
  • organism-icon Mus musculus
  • sample-icon 16 Downloadable Samples
  • Technology Badge Icon

Description

Findings suggest that PPARalpha plays a decisive role in the development of hypertrophy, affecting the functional outcome of the heart. Unfortunately, information on the nature of PPARalpha-dependent processes in cardiac hypertrophy is fragmentary and incomplete.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-12337

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13567
US28-expressing and mock-transfected stable NIH-3T3 cell lines
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

The human cytomegalovirus (HCMV) encodes the chemokine receptor US28 that exhibits constitutive activity. NIH-3T3 cells stably transfected with US28 present a pro-angiogenic and transformed phenotype both in vitro and in vivo.

Publication Title

The human cytomegalovirus-encoded chemokine receptor US28 promotes angiogenesis and tumor formation via cyclooxygenase-2.

Alternate Accession IDs

E-GEOD-13567

Sample Metadata Fields

No sample metadata fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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