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accession-icon GSE38200
Ikaros target genes in the mouse pre-B cell line B3
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation.

Alternate Accession IDs

E-GEOD-38200

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE38110
Gene expression in mouse pre-B cells transduced with Ikaros.
  • organism-icon Mus musculus
  • sample-icon 13 Downloadable Samples
  • Technology Badge Icon

Description

Ikaros family DNA binding proteins are critical regulators of B cell development. To identify Ikaros-regulated genes in pre-B cells we performed gene expression studies at enhanced temporal resolution.

Publication Title

Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation.

Alternate Accession IDs

E-GEOD-38110

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE25890
Expression data from mouse Nuocytes
  • organism-icon Mus musculus
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

Nuocytes are a recently described cell that responds to both IL-25 and IL-33 and produce high levels of IL-13 and IL-5

Publication Title

Nuocytes represent a new innate effector leukocyte that mediates type-2 immunity.

Alternate Accession IDs

E-GEOD-25890

Sample Metadata Fields

Specimen part, Time

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accession-icon GSE90808
Expression data from macrophages of E-selectin+/+ and E-selectin-/- mouse infected with Listeria monocytogenes in vivo on day3
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

We used microarrays to detail the global gene expression in peritoneal macrophages (PM) from E-selectin+/+ and E-selectin-/- mouse infected with Listeria Monocytogenes in vivo on day3

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-90808

Sample Metadata Fields

Specimen part

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accession-icon GSE40661
Gata2 is a master regulator of endometrial function and progesterone signaling
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

A Gata2-Dependent Transcription Network Regulates Uterine Progesterone Responsiveness and Endometrial Function.

Alternate Accession IDs

E-GEOD-40661

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

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accession-icon GSE57642
Expression data from intestinal epithelial cells (IECs)
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-57642

Sample Metadata Fields

Specimen part

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accession-icon GSE40660
Gata2 is a master regulator of endometrial function and progesterone signaling [Affymetrix]
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

The role of Gata2 in regulating uterine function including fertility, implantation, decidualization and P4 signaling in the mouse was investigated by the conditional ablation of Gata2 in the uterus using the (PR-cre) mouse and ChIP-seq for in vivo GATA2 binding sites in the murine uterus upon acute P4 administration.

Publication Title

A Gata2-Dependent Transcription Network Regulates Uterine Progesterone Responsiveness and Endometrial Function.

Alternate Accession IDs

E-GEOD-40660

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE57641
Expression data from intestinal epithelial cells (IECs) [Mouse430_2 array]
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon

Description

Polycomb group (PcG) proteins are epigenetic silencers whose dysregulation is frequently linked to cancer via mechanisms that remain unclear. Using conditional knock-out mice in a colitis-associated colorectal cancer (CAC) model, we found that Bmi1 and Mel18 are important initiation and maintenance factors during CAC tumorigenesis. Epithelial depletion of both Bmi1 and Mel18, but not either gene alone, significantly reduces tumor growth and multiplicity.

Publication Title

BMI1 and MEL18 Promote Colitis-Associated Cancer in Mice via REG3B and STAT3.

Alternate Accession IDs

E-GEOD-57641

Sample Metadata Fields

Specimen part

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accession-icon GSE39392
Androgenetic haploid embryonic stem cells
  • organism-icon Mus musculus
  • sample-icon 21 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Androgenetic haploid embryonic stem cells produce live transgenic mice.

Alternate Accession IDs

E-GEOD-39392

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE39391
Gene expression data from ahES cells, ES cells, MEF cells and round sperm
  • organism-icon Mus musculus
  • sample-icon 21 Downloadable Samples
  • Technology Badge Icon

Description

Haploid stem cells offer an easy-to-manipulate genetic system and therefore have great values for studies of recessive phenotypes. Here, we show that mouse androgenetic haploid ES (ahES) cell lines can be established by transferring sperm into enucleated oocyte. The ahES cells maintain haploidy and stable growth over 30 passages, express pluripotent markers, possess the ability to differentiate into all three germ-layers in vitro and in vivo, and contribute to germline of chimeras when injected into blastocysts. Although epigenetically distinct from sperm cells, the ahES cells can produce viable and fertile progenies after intracytoplasmic injection into mature oocytes. The oocyte injection procedure can also produce viable transgenic mice from genetically engineered ahES cells.

Publication Title

Androgenetic haploid embryonic stem cells produce live transgenic mice.

Alternate Accession IDs

E-GEOD-39391

Sample Metadata Fields

Specimen part, Cell line

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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