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accession-icon GSE48646
Compare RNA profile between LPS+CPN and LPS+CPN+GGOH treated peritoneal macrophages
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

To find out genes regulated by geranylgeraniol (GGOH) treatment in peritoneal macrophage, we compared gene expression of cells treated with 200ng ml LPS and 250 micromolar compactin versus 200ng ml LPS, 250 micromolar compactin and 100micromolar GGOH.

Publication Title

Sufficient production of geranylgeraniol is required to maintain endotoxin tolerance in macrophages.

Alternate Accession IDs

E-GEOD-48646

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE67391
Expression data from testis of two-month-old WT and Ccnyl1 KO mice
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon

Description

Ccnyl1 is a newly identified genes, but the founction of which remained unclear, here we used the Ccnyl1 knockout mice to finding clues for its functional roles

Publication Title

CCNYL1, but Not CCNY, Cooperates with CDK16 to Regulate Spermatogenesis in Mouse.

Alternate Accession IDs

E-GEOD-67391

Sample Metadata Fields

Specimen part

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accession-icon GSE10628
Foxj3 KO myoblast transcriptome data
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

Myoblasts harvested from a postnatal day 2 WT and Foxj3 KO litter.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-10628

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13946
Comparison of gamma delta intraepithelial lymphocytes from DSS-treated and untreated colon
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

gamma delta intraepithelial lymphocytes were isolated from the colons of DSS-treated and untreated mice. Total RNAs were isolated and compared by Affymetrix DNA microarray.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-13946

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE28437
Expression data from mouse small intestinal intraepithelial lymphocytes
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

The mammalian gastrointestinal tract harbors thousands of bacterial species that include symbionts as well as potential pathogens. The immune responses that limit access of these bacteria to underlying tissue remain poorly defined.

Publication Title

Gammadelta intraepithelial lymphocytes are essential mediators of host-microbial homeostasis at the intestinal mucosal surface.

Alternate Accession IDs

E-GEOD-28437

Sample Metadata Fields

Specimen part

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accession-icon GSE14481
identification of TGCT genes involved in initiation and maintenance of transformed germ cells.
  • organism-icon Mus musculus
  • sample-icon 11 Downloadable Samples
  • Technology Badge Icon

Description

Initially, we had compared gene expression differences in the embryonic gonads (E13.5) of the 129 and M19 strains by performing microarray analysis. These studies allowed us to identify downregulation of expression of the D19Bwg1357e, Zfp162 and Cox15 genes in the M19 strain.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-14481

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE12948
Oncogenesis of T-ALL and non-malignant consequences of overexpressing NOTCH1
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon

Description

We have determined the consequences of ICN1 overexpression from retroviral vectors introduced into bone marrow cells.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-12948

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE47965
Environmental factors transmitted by aryl hydrocarbon receptor influence severity of psoriatic skin inflammation
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Activation of the aryl hydrocarbon receptor dampens the severity of inflammatory skin conditions.

Alternate Accession IDs

E-GEOD-47965

Sample Metadata Fields

Sex, Age, Specimen part, Treatment, Subject

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accession-icon GSE17949
Integrated cell-to-cell signaling networks regulate vertebrate axis formation and left-right asymmetry
  • organism-icon Danio rerio
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

Target genes of four signaling pathways (Notch, Fgf, Retinoic Acid [RA] and Wnt) are identified in the posterior presomitic mesoderm of 12 somite stage zebrafish embryos.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-17949

Sample Metadata Fields

Specimen part

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accession-icon GSE30268
Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC).
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC).

Alternate Accession IDs

E-GEOD-30268

Sample Metadata Fields

Specimen part, Cell line, Treatment

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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