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accession-icon GSE70418
A Detailed Characterization of the Dysfunctional Immunity and Abnormal Myelopoiesis Induced by Severe Shock and Trauma in the Aged
  • organism-icon Mus musculus
  • sample-icon 69 Downloadable Samples
  • Technology Badge Icon

Description

The polytrauma (PT) murine model has unique transcriptomic responses 2 hrs, 1 day and 3 days after injury. We determined with this clinically relevant model that the increased morbidity in the elderly is secondary to a failure of bone marrow progenitors, blood neutrophils, and bronchoalveolar lavage cells to initiate and complete an 'emergency myelopoietic' response, engendering myeloid cells that fail to clear secondary infection. In addition, the elderly appear unable to effectively resolve their inflammatory response to severe injury.

Publication Title

A Detailed Characterization of the Dysfunctional Immunity and Abnormal Myelopoiesis Induced by Severe Shock and Trauma in the Aged.

Alternate Accession IDs

E-GEOD-70418

Sample Metadata Fields

Sex, Specimen part, Treatment

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accession-icon GSE69345
Patterns of gene expression among murine models of hemorrhagic shock trauma and sepsis
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon

Description

The PT , PT + PP, and CLP murine models have unique transcriptomic respones 2 hrs, 1 and 3 days after injury

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-69345

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE51925
Aged Mice are Unable to Mount an Effective Myeloid Response to Sepsis
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

Old C57BL/6 mice cannot mount an effective innate immune response

Publication Title

Aged mice are unable to mount an effective myeloid response to sepsis.

Alternate Accession IDs

E-GEOD-51925

Sample Metadata Fields

Specimen part, Treatment, Time

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accession-icon GSE15640
Salivary gland during development and onset of xerostomia in murine model of Sjgren's syndrome-like disease
  • organism-icon Mus musculus
  • sample-icon 25 Downloadable Samples
  • Technology Badge Icon

Description

Differential gene expression in the salivary gland during development and onset of xerostomia in Sjgrens syndrome-like disease of the C57BL/6.NOD-Aec1Aec2 mouse.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-15640

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE36378
Mapping the Transcriptional Landscape of Autoimmune Targeted Tissues: Transient Alterations in the Extracellular Milieu Precede Innate and Delayed Adaptive Immune Responses in Spontaneous Experimental Autoimmunity.
  • organism-icon Mus musculus
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon

Description

The C57BL/6.NOD-Aec1Aec2 mouse is a model for primary Sjgrens syndrome and was constructed by introducing two genetic intervals derived from the NOD mouse that confers Sjgrens syndrome (SjS)-like disease in SjS-non-susceptible C57BL/6 mice.

Publication Title

Transcriptional landscapes of emerging autoimmunity: transient aberrations in the targeted tissue's extracellular milieu precede immune responses in Sjögren's syndrome.

Alternate Accession IDs

E-GEOD-36378

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE23738
Global changes of expression patterns of vaccinia virus infected lungs of C57BL/6 mice.
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

Vaccinia virus infection of mouse lungs produces a focal infection within the lung remaining at the large bronchi throughout the course of infection. Animals die of respiratory failure with little edema and few infiltrating immune cells. It is well established that poxviruses control the host immune system by encoding multiple host defense pathway antagonists.

Publication Title

Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice.

Alternate Accession IDs

E-GEOD-23738

Sample Metadata Fields

Specimen part

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accession-icon GSE13807
Identification and validation of gene expression changes upon removal of Dicer in the murine limb mesenchyme
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon

Description

Wild type and Dicer null embryonic mouse limbs were analaysed using Affymetrix arrays to identify gene expression changes. Genes that were up-regulated in Dicer-null limbs were canidates for being miRNA targets.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-13807

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE10377
Strains for eQTL CNV Analysis
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

Background

Publication Title

Expression quantitative trait loci mapping identifies new genetic models of glutathione S-transferase variation.

Alternate Accession IDs

E-GEOD-10377

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE84767
Genetics of the hippocampal transcriptome in mouse: a systematic survey and online neurogenomics resource
  • organism-icon Mus musculus
  • sample-icon 67 Downloadable Samples
  • Technology Badge Icon

Description

The Hippocampus Consortium data set provides estimates of mRNA expression in the adult hippocampus of 99 genetically diverse strains of mice including 67 BXD recombinant inbred strains, 13 CXB recombinant inbred strains, a diverse set of common inbred strains, and two reciprocal F1 hybrids.

Publication Title

Genetics of the hippocampal transcriptome in mouse: a systematic survey and online neurogenomics resource.

Alternate Accession IDs

E-GEOD-84767

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE40540
IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.

Alternate Accession IDs

E-GEOD-40540

Sample Metadata Fields

Sex, Specimen part, Treatment, Time

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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